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HUMAN LXR BETA HORMONE RECEPTOR / GW3965 COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Thyroid hormone receptor beta
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 isopropanol, PEG 4000, HEPES, glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.2 43.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.717 α = 90 b = 98.929 β = 90 c = 175.815 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Toroidal mirror 2002-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 58 98.5 0.045 8.8 3.3 40332 40332 46.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 95.4 0.218 3.5 2.9 5585
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Thyroid hormone receptor beta 2.4 87.71 40931 38254 2021 98.41 0.20934 0.20934 0.20655 0.2891 0.26237 0.3314 RANDOM 23.076
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 1.03 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.477 r_scangle_it 2.997 r_scbond_it 1.749 r_angle_refined_deg 1.363 r_mcangle_it 1.039 r_angle_other_deg 0.924 r_mcbond_it 0.534 r_symmetry_vdw_other 0.237 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.477 r_scangle_it 2.997 r_scbond_it 1.749 r_angle_refined_deg 1.363 r_mcangle_it 1.039 r_angle_other_deg 0.924 r_mcbond_it 0.534 r_symmetry_vdw_other 0.237 r_nbd_other 0.216 r_xyhbond_nbd_refined 0.209 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.174 r_symmetry_hbond_refined 0.142 r_nbtor_other 0.086 r_chiral_restr 0.083 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7375 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing