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Crystal structure of Caldicellulosiruptor saccharolyticus CBM27-1 in complex with mannohexaose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 283.15 PEG4000, Isopropanol, Na-Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 283.15K
Crystal Properties Matthews coefficient Solvent content 2.3 46.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.281 α = 90 b = 45.7 β = 90 c = 110.113 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MARRESEARCH mirrors 2003-01-30 M SINGLE WAVELENGTH 2 1 x-ray 110 IMAGE PLATE MARRESEARCH mirrors 2003-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9795 BESSY 14.2 2 SYNCHROTRON BESSY BEAMLINE 14.2 0.97981 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.06 30 89.8 0.048 34.6 5.6 84822 81658 8.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.06 1.09 74.7 0.09 1544
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.06 23 2 84822 80596 4226 95.9 0.204 0.14287 0.14132 0.1859 0.1729 0.2059 RANDOM 17.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 -0.74 -0.17
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 15.47 r_sphericity_bonded 9.375 r_dihedral_angle_1_deg 7.353 r_scangle_it 6.779 r_scbond_it 5.328 r_mcangle_it 3.945 r_mcbond_it 2.948 r_rigid_bond_restr 2.775 r_angle_refined_deg 2.07 r_angle_other_deg 1.801
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 15.47 r_sphericity_bonded 9.375 r_dihedral_angle_1_deg 7.353 r_scangle_it 6.779 r_scbond_it 5.328 r_mcangle_it 3.945 r_mcbond_it 2.948 r_rigid_bond_restr 2.775 r_angle_refined_deg 2.07 r_angle_other_deg 1.801 r_symmetry_vdw_refined 0.366 r_symmetry_vdw_other 0.354 r_nbd_other 0.267 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.133 r_nbtor_other 0.093 r_gen_planes_other 0.015 r_bond_refined_d 0.014 r_gen_planes_refined 0.014 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1528 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling SOLVE phasing RESOLVE phasing