1PM6
Solution Structure of Full-Length Excisionase (Xis) from Bacteriophage HK022
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1 mM Xis, 50 mM sodium phosphate, 100 mM sodium chloride, 0.2 mM EDTA disodium salt, 0.03% sodium azide | 100% D2O | |||||
2 | 2D NOESY | 1 mM Xis, 50 mM sodium phosphate, 100 mM sodium chloride, 0.2 mM EDTA disodium salt, 0.03 % sodium azide, 95% H2O, 5% D2O | 95% H2O/5% D2O | |||||
3 | 3D_15N-separated_NOESY | 1 mM Xis U-15N, 50 mM sodium phosphate, 100 mM sodium chloride, 0.2 mM EDTA disodium salt, 0.03 % sodium azide, 95% H2O, 5% D2O | 95% H2O/5% D2O | |||||
4 | 3D_13C-separated_NOESY | 1 mM Xis U-13C,15N, 50 mM sodium phosphate, 100 mM sodium chloride, 0.2 mM EDTA disodium salt, 0.03 % sodium azide, 95% H2O, 5% D2O | 95% H2O/5% D2O |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Bruker | DMX | 600 |
NMR Refinement | ||
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Method | Details | Software |
energy minimization | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Additional NMR Experimental Information | |
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Details | The structure was determined using triple-resonance and homonuclear NMR spectroscopy. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 2.6 | Bruker |
2 | data analysis | AURELIA | 2.7.5 | Bruker |
3 | data analysis | Felix | 97 | Accelrys |
4 | structure solution | DYANA | 1.5 | Guentert |
5 | refinement | Discover | 2.98 | Accelrys |
6 | refinement | Procheck-NMR | 3.4.4 | Laskowski |