1PIB
Solution structure of DNA containing CPD opposited by GA
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 90% H2O/10% D2O | 100mM NaCl | 7.0 | ambient | 277 | |
2 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 300 | |
3 | 2D NOESY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 290 | |
4 | DQF-COSY | 1mM DNA, 20mM phosphate buffer | 99.9% D2O | 100mM NaCl | 7.0 | ambient | 290 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with acceptable covalent geometry |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 16 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Frank Delaglio | |
2 | structure solution | X-PLOR | 3.1 | Brunger |
3 | data analysis | Sparky | 3.106 | T. D. Goddard |
4 | refinement | X-PLOR | 3.1 | Brunger |