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YCDX PROTEIN IN AUTOINHIBITED STATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M65
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.1 M Tris, 60% AS, 3% MPD, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.57 52.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.13 α = 90 b = 77.33 β = 103.17 c = 82.28 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirror 2003-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.000 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 99.8 0.081 16.2 4.7 59787 59787 -3 17.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2 98.6 0.212 3.3 4.7 7470
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1M65 1.95 10 59272 59272 100 0.164 0.1685 24.717
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 0.03 -0.78 1.12
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 9.724 r_scbond_it 8.083 r_dihedral_angle_1_deg 6.279 r_mcangle_it 5.881 r_mcbond_it 4.611 r_angle_refined_deg 1.361 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.15
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 9.724 r_scbond_it 8.083 r_dihedral_angle_1_deg 6.279 r_mcangle_it 5.881 r_mcbond_it 4.611 r_angle_refined_deg 1.361 r_nbd_refined 0.236 r_symmetry_vdw_refined 0.205 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.101 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5435 Nucleic Acid Atoms Solvent Atoms 717 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing