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Crystal Structure of Vibrio cholerae putative NTPase EpsE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 PEG 200,3-morpholinopropanesulfonate, ammonium acetate, AMP-PNP, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.73 54.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.611 α = 90 b = 103.611 β = 90 c = 166.261 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU: Double crystal: Si(111) 2002-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9748 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 60 100 0.102 18.6 12.7 18982 48.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.54 100 0.653 4.3 13.2 930
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.5 50 18927 15262 808 84.9 0.21653 0.21397 0.2079 0.26508 0.2595 RANDOM 39.879
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.38 0.76 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.155 r_scangle_it 6.127 r_scbond_it 4.223 r_mcangle_it 3.125 r_mcbond_it 1.657 r_angle_refined_deg 1.374 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.155 r_scangle_it 6.127 r_scbond_it 4.223 r_mcangle_it 3.125 r_mcbond_it 1.657 r_angle_refined_deg 1.374 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.221 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2932 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction ELVES data reduction CCP4 data scaling SOLVE phasing