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BACTERIORHODOPSIN M1 INTERMEDIATE PRODUCED AT ROOM TEMPERATURE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M0L PDB ENTRY 1M0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CUBIC LIPID PHASE 5.6 295 mono-olein, potassium phosphate, pH 5.60, CUBIC LIPID PHASE, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.78 30.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.907 α = 90 b = 60.907 β = 90 c = 108.574 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 2002-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.979 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 25 92.1 0.043 41.5 36506 36506 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.56 80.7 0.62 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R PDB ENTRY 1M0L 1.52 25 36491 30220 1839 92.1 0.1754 0.2073 THIN SHELLS
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 233 2073.79
RMS Deviations Key Refinement Restraint Deviation s_zero_chiral_vol 0.048 s_angle_d 0.047 s_non_zero_chiral_vol 0.047 s_anti_bump_dis_restr 0.043 s_from_restr_planes 0.0229 s_bond_d 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1720 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 329
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXL-97 model building SHELXL-97 refinement SHELXL-97 phasing