X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1P72PDB ENTRY 1P72

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5298Ammonium sulfate, MES, Dioxane, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7254.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.65α = 90
b = 121.55β = 90
c = 118.83γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-C0.9APS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1254599

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1P72224.354920749207539299.620.192350.192350.187420.23719RANDOM36.332
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.44-0.49-0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.367
r_scangle_it3.296
r_scbond_it2.092
r_mcangle_it1.445
r_angle_refined_deg1.324
r_mcbond_it0.79
r_nbd_refined0.202
r_symmetry_vdw_refined0.181
r_symmetry_hbond_refined0.178
r_xyhbond_nbd_refined0.167
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.367
r_scangle_it3.296
r_scbond_it2.092
r_mcangle_it1.445
r_angle_refined_deg1.324
r_mcbond_it0.79
r_nbd_refined0.202
r_symmetry_vdw_refined0.181
r_symmetry_hbond_refined0.178
r_xyhbond_nbd_refined0.167
r_chiral_restr0.092
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5178
Nucleic Acid Atoms
Solvent Atoms452
Heterogen Atoms64

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
XDSdata scaling