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Crystal structure of the nucleocapsid protein of porcine reproductive and respiratory syndrome virus (PRRSV)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 288 PEG3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.21 44.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.657 α = 90 b = 44.657 β = 90 c = 125.347 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.74 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 25 99 0.041 24.6 19.9 4813 4813 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.68 100 0.22 12 389
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION S-SAD THROUGHOUT 2.6 10 -2 4456 4456 210 100 0.2124 0.2124 0.20989 0.2148 0.26659 RANDOM 18.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.81 1.4 2.81 -4.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.704 r_scangle_it 3.54 r_scbond_it 2.109 r_angle_refined_deg 1.766 r_mcangle_it 1.176 r_mcbond_it 0.621 r_xyhbond_nbd_refined 0.272 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.186 r_symmetry_hbond_refined 0.159
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.704 r_scangle_it 3.54 r_scbond_it 2.109 r_angle_refined_deg 1.766 r_mcangle_it 1.176 r_mcbond_it 0.621 r_xyhbond_nbd_refined 0.272 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.186 r_symmetry_hbond_refined 0.159 r_chiral_restr 0.129 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 894 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing