☰ Navigation Tabs
X-ray structure of the ternary Caf1M:Caf1:Caf1 chaperone:subunit:subunit complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Refined model of binary Caf1M:Caf1 pre-assembly complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.9 293 PEG 8000, calcium acetate, cacodylate, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 178.816 α = 90 b = 69.62 β = 90 c = 45.271 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 87.71 0.086 5.4 5.4 34536 34536 23.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.15 82 0.24 3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Refined model of binary Caf1M:Caf1 pre-assembly complex 1.99 87.71 34445 32723 1754 87.28 0.1682 0.16555 0.21634 RANDOM 17.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 -0.36 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.204 r_scangle_it 5.602 r_scbond_it 3.522 r_mcangle_it 2.264 r_angle_refined_deg 2.06 r_mcbond_it 1.31 r_angle_other_deg 0.954 r_symmetry_vdw_other 0.289 r_nbd_other 0.266 r_symmetry_vdw_refined 0.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.204 r_scangle_it 5.602 r_scbond_it 3.522 r_mcangle_it 2.264 r_angle_refined_deg 2.06 r_mcbond_it 1.31 r_angle_other_deg 0.954 r_symmetry_vdw_other 0.289 r_nbd_other 0.266 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.136 r_nbtor_other 0.093 r_bond_refined_d 0.027 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3692 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling