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DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH BOUND INHIBITOR FRAGMENT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JKL PDB entry 1JKL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 297 Ammonium sulfate, Tris, MgCl2, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 1.89 34.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.238 α = 90 b = 62.527 β = 90 c = 88.927 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.0 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.9 0.049 25.8 4 20869 20869 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 97.3 0.213 5.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 1JKL 1.9 20 20190 19405 778 94.88 0.18641 0.18454 0.2328 0.2541 RANDOM 21.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.69 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.375 r_dihedral_angle_4_deg 20.125 r_dihedral_angle_3_deg 13.251 r_dihedral_angle_1_deg 5.137 r_scangle_it 3.195 r_scbond_it 2.064 r_mcangle_it 1.31 r_angle_refined_deg 1.216 r_mcbond_it 0.993 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.375 r_dihedral_angle_4_deg 20.125 r_dihedral_angle_3_deg 13.251 r_dihedral_angle_1_deg 5.137 r_scangle_it 3.195 r_scbond_it 2.064 r_mcangle_it 1.31 r_angle_refined_deg 1.216 r_mcbond_it 0.993 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.172 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2210 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling CNS refinement CNS phasing MAR345 data collection