☰ Navigation Tabs
Crystal structure solution of Rice GST1 (OsGSTU1) in complex with glutathione.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GWC PDB ENTRY 1GWC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.74 293 PEG 4000, magnesium chloride, HEPES, pH 7.74, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.79 55.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.829 α = 90 b = 91.129 β = 90 c = 165.034 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2002-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.979 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 40 91.7 0.102 7.3 85157 78138 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.001
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GWC 1.95 40 68290 3635 84.5 0.1803 0.1803 0.17786 0.19 0.22675 0.2356 RANDOM 29.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.79 1.87 -3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.757 r_dihedral_angle_1_deg 4.991 r_scangle_it 4.775 r_scbond_it 3.046 r_mcangle_it 2.132 r_angle_refined_deg 2.111 r_mcbond_it 1.286 r_angle_other_deg 1.228 r_symmetry_vdw_other 0.29 r_nbd_refined 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 19.757 r_dihedral_angle_1_deg 4.991 r_scangle_it 4.775 r_scbond_it 3.046 r_mcangle_it 2.132 r_angle_refined_deg 2.111 r_mcbond_it 1.286 r_angle_other_deg 1.228 r_symmetry_vdw_other 0.29 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.222 r_nbd_other 0.218 r_chiral_restr 0.204 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_other 0.184 r_metal_ion_refined 0.182 r_nbtor_other 0.123 r_symmetry_hbond_other 0.116 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7083 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 217
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing