☰ Navigation Tabs
Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 291 PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.45 49.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.402 α = 90 b = 149.045 β = 90 c = 176.422 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2000-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 35 98.9 0.079 16.2 73299 73299 4 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 98.3 0.342 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 36.51 1 69488 69488 3749 100 0.19471 0.19149 0.1978 0.25561 0.2578 RANDOM 20.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 0.03 0.09
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 24.632 r_scbond_it 23.579 r_dihedral_angle_2_deg 15.697 r_mcangle_it 15.573 r_mcbond_it 12.692 r_dihedral_angle_1_deg 3.348 r_angle_refined_deg 1.102 r_symmetry_hbond_refined 1.033 r_nbd_refined 0.271 r_xyhbond_nbd_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 24.632 r_scbond_it 23.579 r_dihedral_angle_2_deg 15.697 r_mcangle_it 15.573 r_mcbond_it 12.692 r_dihedral_angle_1_deg 3.348 r_angle_refined_deg 1.102 r_symmetry_hbond_refined 1.033 r_nbd_refined 0.271 r_xyhbond_nbd_refined 0.222 r_symmetry_vdw_refined 0.193 r_chiral_restr 0.073 r_metal_ion_refined 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8085 Nucleic Acid Atoms Solvent Atoms 810 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing