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Crystal structure of GlcV, the ABC-ATPase of the glucose ABC transporter from Sulfolobus solfataricus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.3 291 PEG 3350, PEG 400, Tris, NaI, glycerol, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.24 44.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.028 α = 90 b = 48.267 β = 90 c = 183.037 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 45 98.1 0.068 22.4 5.8 49451 49451 6 6 19.562
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.69 90.7 0.373 5.9 5.5 2966
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION experimental phases derived from SAD data (iodide ions) THROUGHOUT 1.65 44.72 1 45286 45286 3942 99.54 0.16867 0.1653 0.1771 0.20857 0.2179 RANDOM 12.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.01 0.07
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 43.315 r_scangle_it 40.211 r_dihedral_angle_2_deg 16.102 r_mcangle_it 8.496 r_dihedral_angle_1_deg 4.883 r_mcbond_it 3.538 r_angle_refined_deg 1.617 r_angle_other_deg 1.481 r_symmetry_vdw_refined 0.466 r_symmetry_vdw_other 0.424
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 43.315 r_scangle_it 40.211 r_dihedral_angle_2_deg 16.102 r_mcangle_it 8.496 r_dihedral_angle_1_deg 4.883 r_mcbond_it 3.538 r_angle_refined_deg 1.617 r_angle_other_deg 1.481 r_symmetry_vdw_refined 0.466 r_symmetry_vdw_other 0.424 r_symmetry_hbond_refined 0.351 r_xyhbond_nbd_refined 0.325 r_nbd_refined 0.245 r_nbd_other 0.226 r_nbtor_other 0.21 r_chiral_restr 0.119 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2742 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHARP phasing SOLOMON phasing ARP/wARP model building