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Complex between YPD1 and SLN1 response regulator domain in space group P3(2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QSP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 296 ammonium sulfate, sodium acetate, BeCl2, NaF, MnCl2, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.53 50.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.3 α = 90 b = 91.3 β = 90 c = 200.35 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV osmic confocal mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 95.6 0.053 30.7 5.2 104211 104211
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 72.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1QSP 2.1 30 104211 98990 5221 95.59 0.236 0.23733 0.23621 0.25828 0.2091 RANDOM 29.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.13 -0.26 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.259 r_dihedral_angle_1_deg 4.157 r_scangle_it 3.96 r_scbond_it 2.379 r_angle_refined_deg 1.734 r_mcangle_it 1.636 r_angle_other_deg 0.944 r_mcbond_it 0.892 r_symmetry_vdw_other 0.317 r_symmetry_hbond_refined 0.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 17.259 r_dihedral_angle_1_deg 4.157 r_scangle_it 3.96 r_scbond_it 2.379 r_angle_refined_deg 1.734 r_mcangle_it 1.636 r_angle_other_deg 0.944 r_mcbond_it 0.892 r_symmetry_vdw_other 0.317 r_symmetry_hbond_refined 0.286 r_nbd_refined 0.247 r_symmetry_vdw_refined 0.241 r_nbd_other 0.214 r_nbtor_other 0.191 r_xyhbond_nbd_refined 0.173 r_xyhbond_nbd_other 0.12 r_chiral_restr 0.102 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13326 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing