1OW8

Paxillin LD2 motif bound to the Focal Adhesion Targeting (FAT) domain of the Focal Adhesion Kinase


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1K05PDBentry 1K05

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.3292sodium chloride, glycerol, Hepes, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
4.8674.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.976α = 90
b = 220.78β = 90
c = 97.373γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHtwo crystals monochromator between two cylindrical parabolic mirrors2002-06-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30A0.98ESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8534.599.60.120.15.13.7224562245682.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.852.9599.30.810.681.23.22159

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDBentry 1K052.8534.52245622456114999.260.237260.237260.235240.27548RANDOM67.913
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.32-0.18-5.14
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.896
r_dihedral_angle_1_deg6.183
r_mcangle_it4.82
r_scbond_it4.352
r_angle_other_deg3.464
r_mcbond_it2.767
r_angle_refined_deg2.059
r_symmetry_vdw_refined0.296
r_symmetry_vdw_other0.293
r_nbd_other0.291
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it6.896
r_dihedral_angle_1_deg6.183
r_mcangle_it4.82
r_scbond_it4.352
r_angle_other_deg3.464
r_mcbond_it2.767
r_angle_refined_deg2.059
r_symmetry_vdw_refined0.296
r_symmetry_vdw_other0.293
r_nbd_other0.291
r_nbd_refined0.273
r_symmetry_hbond_refined0.223
r_xyhbond_nbd_refined0.164
r_chiral_restr0.112
r_nbtor_other0.109
r_bond_refined_d0.012
r_gen_planes_refined0.01
r_gen_planes_other0.009
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3431
Nucleic Acid Atoms
Solvent Atoms41
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
AMoREphasing