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Structure of the p22phox-p47phox complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NG2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 1 M Na-Citrate, 0.1 M Na-cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.49 50.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.66 α = 90 b = 57.81 β = 90 c = 45.17 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Mirrors 2002-09-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.98 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.2 0.05 6.9 226852 225037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 99.1 0.37 3.6 3197
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NG2 1.8 20 31232 30873 1647 98.85 0.232 0.232 0.229 0.275 RANDOM 21.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.15 5.08 -2.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.728 r_dihedral_angle_1_deg 3.71 r_scangle_it 2.45 r_scbond_it 1.592 r_angle_refined_deg 1.258 r_mcangle_it 1.181 r_mcbond_it 0.679 r_symmetry_hbond_refined 0.293 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.728 r_dihedral_angle_1_deg 3.71 r_scangle_it 2.45 r_scbond_it 1.592 r_angle_refined_deg 1.258 r_mcangle_it 1.181 r_mcbond_it 0.679 r_symmetry_hbond_refined 0.293 r_nbd_refined 0.235 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.194 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2221 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing