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PqqC, Pyrroloquinolinquinone Synthase C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 298 1.4M ammonium sulphate, cacodylate , pH 6.8, VAPOR DIFFUSION, SITTING DROP, temperature 25K
Crystal Properties Matthews coefficient Solvent content 2.51 50.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.151 α = 90 b = 118.127 β = 90 c = 68.838 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-05-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.978 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 69 98.1 0.145 10.1 4.4 35745 35743 38.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 96.2 0.41 2.3 3.6 1787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 69.01 35745 33956 1787 99.18 0.19663 0.19663 0.19489 0.2039 0.23014 0.1965 RANDOM 32.916
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 -0.4 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.071 r_mcangle_it 2.914 r_scangle_it 2.673 r_mcbond_it 1.722 r_scbond_it 1.698 r_angle_refined_deg 1.588 r_angle_other_deg 0.826 r_symmetry_vdw_other 0.343 r_symmetry_hbond_refined 0.282 r_nbd_other 0.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.071 r_mcangle_it 2.914 r_scangle_it 2.673 r_mcbond_it 1.722 r_scbond_it 1.698 r_angle_refined_deg 1.588 r_angle_other_deg 0.826 r_symmetry_vdw_other 0.343 r_symmetry_hbond_refined 0.282 r_nbd_other 0.253 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.221 r_nbtor_other 0.097 r_chiral_restr 0.096 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4154 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing