☰ Navigation Tabs
Structure of the Ankyrin Domain of the Drosophila Notch Receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 MPD, Magnesium Acetate, Sodium Cacodylate, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.28 62.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.629 α = 90 b = 73.629 β = 90 c = 341.056 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.1000 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.94 62729 62729
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 20 56389 6340 96.79 0.17947 0.17742 0.1788 0.19759 0.199 RANDOM 16.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -1.01 2.02
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.65 r_scbond_it 3.656 r_mcangle_it 1.908 r_angle_refined_deg 1.434 r_dihedral_angle_1_deg 1.266 r_mcbond_it 1.114 r_symmetry_vdw_refined 0.31 r_nbd_refined 0.235 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.125
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.65 r_scbond_it 3.656 r_mcangle_it 1.908 r_angle_refined_deg 1.434 r_dihedral_angle_1_deg 1.266 r_mcbond_it 1.114 r_symmetry_vdw_refined 0.31 r_nbd_refined 0.235 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.102 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4565 Nucleic Acid Atoms Solvent Atoms 468 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing