☰ Navigation Tabs
APOLIPOPROTEIN E3 (APOE3), TRIGONAL TRUNCATION MUTANT 165
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 RT, 50MM NA-CACODYLATE, PH 5.6, 10-20% PEG 400, 1% 2-ME. NOTE: W/O 2-ME OR
HIGHER PEG CONCENTRATIONS, OTHER CRYSTAL FORMS APPEARS (SEE PDB ENTRIES 1BZ4,
1OR2).
Crystal Properties Matthews coefficient Solvent content 1.76 30
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.37 α = 90 b = 47.37 β = 90 c = 104.54 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 125 AREA DETECTOR ADSC COLLIMATOR 1997-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 25 97.2 0.068 6.8 27.4 2.9 16782 40.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.73 1.86 95.7 0.225 22.5 3.7 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.73 10 2 13222 1339 89.9 0.229 0.2816 0.238 RANDOM 53.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.23 -3.35 -1.23 2.46
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 20.5 x_scangle_it 11.1 x_scbond_it 7.23 x_mcangle_it 6.62 x_mcbond_it 4.29 x_angle_deg 1.1 x_improper_angle_d 0.59 x_bond_d 0.006 x_bond_d_na x_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 20.5 x_scangle_it 11.1 x_scbond_it 7.23 x_mcangle_it 6.62 x_mcbond_it 4.29 x_angle_deg 1.1 x_improper_angle_d 0.59 x_bond_d 0.006 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing X-PLOR model building CCP4 model building X-PLOR refinement UCSD-system data reduction UCSD-system data scaling X-PLOR phasing CCP4 phasing