1OP1
Solution NMR structure of domain 1 of receptor associated protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | ~1.2 mM 15N/13C isotope labeled D1 of RAP in a 50 mM NaCl, 75 mM NaPi, pH 6.5 | 95% H2O and 5% D2O | 50 mM NaCl, 75 mM NaPi | 6.5 | ambient | 303.5 | |
2 | 4D_13C/15N-separated_NOESY | ~1.2 mM 15N/13C isotope labeled D1 of RAP in a 50 mM NaCl, 75 mM NaPi, pH 6.5 | 95% H2O and 5% D2O | 50 mM NaCl, 75 mM NaPi | 6.5 | ambient | 303.5 | |
3 | 3D_13C-separated_NOESY | ~1.2 mM 15N/13C isotpe-labeled D1 of RAP in a 50 mM NaCl, 75 mM NaPi, pH 6.5 | 99.99% D2O | |||||
4 | HNHA | ~1.2 mM 15N/13C isotope labeled D1 of RAP in a 50 mM NaCl, 75 mM NaPi, pH 6.5 | 95% H2O and 5% D2O | 50 mM NaCl, 75 mM NaPi | 6.5 | ambient | 303.5 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
3 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics and simulated annealing protocol | nih-xplor |
NMR Ensemble Information | |
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Conformer Selection Criteria | |
Conformers Calculated Total Number | |
Conformers Submitted Total Number | 1 |
Additional NMR Experimental Information | |
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Details | The structure was determined using multi-dimensionm hetero-nuclear NMR spectroscopy. The constraints consists of NOE, dihedral, J-coupling, chemical shift, conformational database as well as two sets of dipolar couplings measured from two different alignment media. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | nih-xplor | 1.0.6 | ~1.2 mM D1 of RAP in a 50 mM~1.2 mM D1 ~1.2 mM D1 of RAP inSchwieters, C. D., Kuszewski, J., Tjandra, N. and Clore, G. M. |
2 | processing | NMRPipe | Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J. and Bax, A. | |
3 | data analysis | NMRPipe | Garrett, D. S., Powers, R., Gronenborn, A. M. and Clore, G. M. | |
4 | structure solution | interhlx | K. Yap, University of Toronto, Canada |