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Crystal structure of Plasmodium falciparum Glutathione reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GRS PDB ENTRY 3GRS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.55 51.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.64 α = 90 b = 90.64 β = 90 c = 123.32 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 98.7 13.5 7.5 16434
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.78 99.9 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3GRS 2.6 29.36 16434 14029 1575 95.78 0.25981 0.25558 0.2434 0.2969 0.2935 RANDOM 50.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.783 r_dihedral_angle_1_deg 4.476 r_scangle_it 3.481 r_scbond_it 2.259 r_angle_refined_deg 2.093 r_mcangle_it 1.187 r_mcbond_it 0.662 r_nbd_refined 0.318 r_symmetry_vdw_refined 0.219 r_symmetry_hbond_refined 0.191
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.783 r_dihedral_angle_1_deg 4.476 r_scangle_it 3.481 r_scbond_it 2.259 r_angle_refined_deg 2.093 r_mcangle_it 1.187 r_mcbond_it 0.662 r_nbd_refined 0.318 r_symmetry_vdw_refined 0.219 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.142 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3457 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing