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Supernatant Protein Factor in Complex with RRR-alpha-Tocopherylquinone: A Link between Oxidized Vitamin E and Cholesterol Biosynthesis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.3 pH 8.30
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.856 α = 116.2 b = 84.621 β = 102.64 c = 87.452 γ = 100.24
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 30 100 0.059 14.9 3.9 103050
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.98 71.6 0.34 3.2 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.95 19.65 99913 1811 100 0.181 0.18 0.211 RANDOM 21.51
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.05 -0.15 -0.16 -1.05
RMS Deviations Key Refinement Restraint Deviation r_chiral_restr 6.906 r_scangle_it 4.568 r_scbond_it 3.053 r_mcangle_it 2.608 r_mcbond_it 1.701 r_angle_other_deg 1.06 r_symmetry_hbond_refined 0.25 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.174
RMS Deviations Key Refinement Restraint Deviation r_chiral_restr 6.906 r_scangle_it 4.568 r_scbond_it 3.053 r_mcangle_it 2.608 r_mcbond_it 1.701 r_angle_other_deg 1.06 r_symmetry_hbond_refined 0.25 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.174 r_bond_refined_d 0.01 r_gen_planes_refined 0.002 r_bond_other_d r_angle_refined_deg r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9493 Nucleic Acid Atoms Solvent Atoms 875 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling XSCALE data scaling CNS phasing