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Crystal structure of the dengue 2 virus envelope protein in complex with n-octyl-beta-D-glucoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 11% PEG 8K, 1M NACL, 0.1M TRIS/HCL PH 9.0, 20% GLYCEROL,0.5% OCTYLGLUCOSIDE
Crystal Properties Matthews coefficient Solvent content 3.395 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.602 α = 90 b = 81.602 β = 90 c = 287.408 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-08-15 M SINGLE WAVELENGTH 2 1 x-ray
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1 2 SYNCHROTRON CHESS BEAMLINE A1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 96.8 0.069 26.2 5.5 42998 40.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 74 0.289 3.3 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.4 45 42218 2130 94.7 0.263 0.263 0.2711 0.294 0.3012 RANDOM 76.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 10.02 4.55 6.92 -16.94
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.4 c_scangle_it 9.4 c_scbond_it 7.39 c_mcangle_it 6.5 c_mcbond_it 4.37 c_angle_deg 1.7 c_improper_angle_d 1.09 c_bond_d 0.012 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26.4 c_scangle_it 9.4 c_scbond_it 7.39 c_mcangle_it 6.5 c_mcbond_it 4.37 c_angle_deg 1.7 c_improper_angle_d 1.09 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6124 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 166
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing CNS phasing CNS refinement