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STRUCTURE OF DIHYDROLIPOAMIDE DEHYDROGENASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LVL DLDH OF PSEUDOMONAS PUTIDA, PDB ENTRY 1LVL.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 BRIGHT YELLOW CRYSTALS WERE GROWN IN 24-WELL LINBRO PLATES USING HANGING DROP DIFFUSION METHOD AT ROOM TEMPERATURE. RESERVOIR: 1 ML CONTAINING 0.1M POTASSIUM PHOSPHATE AND 2M AMMONIUM SULFATE (PH 7.0). PRISM CRYSTALS TYPICALLY IN TWO WEEKS AT ROOM TEMPERATURE., vapor diffusion - hanging drop
THE E3 DOMAIN (117-601) CRYSTALLIZES IN AMMONIUM SULFATE.
IT INCLUDES A FAD COFACTOR BUT NOT THE NADH.
THE E3 DOMAIN (117-601) CRYSTALLIZES IN AMMONIUM SULFATE.
IT INCLUDE A FAD COFACTOR BUT NOT THE NADH.
Crystal Properties Matthews coefficient Solvent content 2.73 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.05 α = 90 b = 138.05 β = 90 c = 79.77 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MAR scanner 300 mm plate MULTILAYER MIRROR M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE LURE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 94 0.066 18 7 11724 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.9 70 0.19 4 4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT AND MIR DLDH OF PSEUDOMONAS PUTIDA, PDB ENTRY 1LVL. 2.75 18 15850 0.173 0.232
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28 p_staggered_tor 24 p_planar_tor 2.3 p_multtor_nbd 0.33 p_xyhbond_nbd 0.24 p_singtor_nbd 0.23 p_chiral_restr 0.08 p_planar_d 0.055 p_angle_d 0.05 p_bond_d 0.02
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 28 p_staggered_tor 24 p_planar_tor 2.3 p_multtor_nbd 0.33 p_xyhbond_nbd 0.24 p_singtor_nbd 0.23 p_chiral_restr 0.08 p_planar_d 0.055 p_angle_d 0.05 p_bond_d 0.02 p_plane_restr 0.01 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3556 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 53
Software Software Software Name Purpose MOSFLM data reduction SCALEIT data reduction SHARP phasing PROLSQ refinement CCP4 data reduction CCP4 data scaling