☰ Navigation Tabs
Crystal structure of NblA from PCC 7120
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 100 MM TRIS/HCL PH 8.5 10% PEG2000, 100 MM MGCL2, 15% ETHYLENGLYCOL
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.176 α = 90 b = 95.918 β = 97.05 c = 104.835 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2002-05-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.7 0.069 9.4 3.7 74292 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.97 100 0.46 2.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 74292 3874 99.7 0.184 0.182 0.1923 0.217 0.2231 RANDOM 31.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.55 1.09 -0.72
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.578 r_scbond_it 7.144 r_mcangle_it 6.349 r_dihedral_angle_1_deg 4.567 r_mcbond_it 3.813 r_angle_other_deg 1.515 r_angle_refined_deg 1.478 r_symmetry_vdw_other 0.23 r_nbd_refined 0.215 r_nbd_other 0.212
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 10.578 r_scbond_it 7.144 r_mcangle_it 6.349 r_dihedral_angle_1_deg 4.567 r_mcbond_it 3.813 r_angle_other_deg 1.515 r_angle_refined_deg 1.478 r_symmetry_vdw_other 0.23 r_nbd_refined 0.215 r_nbd_other 0.212 r_symmetry_hbond_refined 0.176 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.092 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5108 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE phasing