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STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0,95 M NA-CITRATE, 0.01 M NA-BORATE PH 8.5
Crystal Properties Matthews coefficient Solvent content 3.2 61.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 237.925 α = 90 b = 237.925 β = 90 c = 66.744 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47 95.3 0.047 0.066 9.3 2.5 80905 23.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 92.7 0.158 0.223 4.6 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2 47 134578 4134 95 0.146 0.145 0.1755 0.164 0.1878 RANDOM 12.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 0.34 0.69 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.212 r_scangle_it 2.404 r_scbond_it 1.391 r_angle_refined_deg 1.115 r_mcangle_it 0.837 r_angle_other_deg 0.776 r_mcbond_it 0.432 r_symmetry_vdw_other 0.246 r_nbd_other 0.229 r_symmetry_hbond_refined 0.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.212 r_scangle_it 2.404 r_scbond_it 1.391 r_angle_refined_deg 1.115 r_mcangle_it 0.837 r_angle_other_deg 0.776 r_mcbond_it 0.432 r_symmetry_vdw_other 0.246 r_nbd_other 0.229 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.158 r_metal_ion_refined 0.157 r_symmetry_vdw_refined 0.147 r_nbtor_other 0.082 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11948 Nucleic Acid Atoms Solvent Atoms 1494 Heterogen Atoms 162
Software Software Software Name Purpose DENZO data reduction SCALA data scaling SOLVE phasing MLPHARE phasing REFMAC refinement