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Dex49A from Penicillium minioluteum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 0.1M SODIUM ACETATE PH 5.5 0.1M NACL, 10MM CACL2, 20 PERCENT MMEPEG 5000
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.67 α = 90 b = 115.516 β = 90 c = 50.04 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 CCD MARRESEARCH 2000-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 35 99.5 0.075 26 7.1 56323
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 98.8 0.409 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 24.33 53417 2850 99.5 0.142 0.1581 0.165 0.1771 RANDOM 11.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.65 r_scangle_it 2.656 r_scbond_it 1.666 r_angle_refined_deg 1.261 r_mcangle_it 1.068 r_angle_other_deg 0.826 r_mcbond_it 0.564 r_symmetry_vdw_other 0.299 r_symmetry_hbond_refined 0.273 r_nbd_other 0.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.65 r_scangle_it 2.656 r_scbond_it 1.666 r_angle_refined_deg 1.261 r_mcangle_it 1.068 r_angle_other_deg 0.826 r_mcbond_it 0.564 r_symmetry_vdw_other 0.299 r_symmetry_hbond_refined 0.273 r_nbd_other 0.244 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.129 r_symmetry_vdw_refined 0.096 r_chiral_restr 0.091 r_nbtor_other 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4391 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MLPHARE phasing