☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH MANGANESE(II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HFB PDB ENTRY 1HFB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 TRIS PH 7.5-9.0 10 MM, 20% PEG3400, 5% GLYCEROL, 2.4 EQUIV. MN, 13-17MG/ML DAHPS
Crystal Properties Matthews coefficient Solvent content 1.94 36.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 196.636 α = 90 b = 50.502 β = 106.36 c = 64.93 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 IMAGE PLATE MARRESEARCH MIRRORS 2001-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 97.4 0.032 15.98 1.87 76999
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 82.7 0.1909 3.82 1.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HFB 2.01 19.92 38160 2006 97.5 0.161 0.1672 0.207 0.219 RANDOM 28.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.941 r_scangle_it 5.299 r_angle_other_deg 3.705 r_scbond_it 3.359 r_mcangle_it 1.945 r_angle_refined_deg 1.932 r_mcbond_it 1.137 r_symmetry_vdw_other 0.327 r_nbd_other 0.294 r_symmetry_hbond_refined 0.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.941 r_scangle_it 5.299 r_angle_other_deg 3.705 r_scbond_it 3.359 r_mcangle_it 1.945 r_angle_refined_deg 1.932 r_mcbond_it 1.137 r_symmetry_vdw_other 0.327 r_nbd_other 0.294 r_symmetry_hbond_refined 0.257 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.141 r_symmetry_vdw_refined 0.125 r_nbtor_other 0.11 r_bond_refined_d 0.023 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5175 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling EPMR phasing