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Structure of Trypanosoma brucei enolase reveals the inhibitory divalent metal site
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ONE PDB ENTRY 1ONE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.01M ZNSO4,0.1 M MES PH 6.5, 25% PEGMME550
Crystal Properties Matthews coefficient Solvent content 2.38 47.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.018 α = 90 b = 110.536 β = 90 c = 109.098 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2002-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 38.82 99.3 0.065 14.2 4.7 20116 32.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 93.4 0.468 1.9 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ONE 2.3 38.82 20116 1023 99.3 0.21 0.21 0.2132 0.251 0.2054 RANDOM 43.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.23 1.12 -6.34
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.1 c_scangle_it 6.97 c_mcangle_it 5.2 c_scbond_it 5.05 c_mcbond_it 3.65 c_angle_deg 1.4 c_improper_angle_d 0.87 c_bond_d 0.007 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.1 c_scangle_it 6.97 c_mcangle_it 5.2 c_scbond_it 5.05 c_mcbond_it 3.65 c_angle_deg 1.4 c_improper_angle_d 0.87 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3211 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 19
Software Software Software Name Purpose CNS refinement AUTOMAR data reduction AUTOMAR data scaling MOLREP phasing