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HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ODX PDB ENTRY 1ODX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.22 44.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.9 α = 90 b = 62.9 β = 90 c = 83.31 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MACSCIENCE MIRRORS 1997-07-11 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 95 0.067 4.7 12082 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 85.1 0.429
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT PDB ENTRY 1ODX 2 8 3 11058 0.167 0.1695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 21.4 p_transverse_tor 14.9 p_scangle_it 5.638 p_scbond_it 3.863 p_planar_tor 3 p_mcangle_it 2.455 p_mcbond_it 1.514 p_multtor_nbd 0.239 p_xyhbond_nbd 0.232 p_singtor_nbd 0.231
RMS Deviations Key Refinement Restraint Deviation p_staggered_tor 21.4 p_transverse_tor 14.9 p_scangle_it 5.638 p_scbond_it 3.863 p_planar_tor 3 p_mcangle_it 2.455 p_mcbond_it 1.514 p_multtor_nbd 0.239 p_xyhbond_nbd 0.232 p_singtor_nbd 0.231 p_chiral_restr 0.221 p_planar_d 0.062 p_angle_d 0.055 p_bond_d 0.021 p_plane_restr 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1507 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 58
Software Software Software Name Purpose X-PLOR model building PROFFT refinement X-PLOR refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing