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Crystal Analysis Of Chorismate Mutase From Thermus Thermophilus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DBF PDB ENTRY 1DBF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.4 PROTEIN WAS CRYSTALLIZED USING MICRO BATCH METHOD UNDER OIL FROM 27.5% PEG 4000, 10% DIOXANE AND 100 MM, TRIS/HCL(PH 8.4).
Crystal Properties Matthews coefficient Solvent content 1.9 36.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.319 α = 90 b = 78.54 β = 90 c = 86.035 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE RAXIS V CYLINDRICAL BEND MIRROR 2002-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.5 0.064 23.5 4.4 174516 -0.5 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99.5 0.383 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DBF 1.65 43.02 38745 1938 98.3 0.213 0.213 0.2098 0.239 RANDOM 22.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.9 -1.14 -1.76
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.2 c_scangle_it 5.88 c_scbond_it 4.18 c_mcangle_it 3.62 c_mcbond_it 2.68 c_angle_deg 1.2 c_improper_angle_d 0.85 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.2 c_scangle_it 5.88 c_scbond_it 4.18 c_mcangle_it 3.62 c_mcbond_it 2.68 c_angle_deg 1.2 c_improper_angle_d 0.85 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2731 Nucleic Acid Atoms Solvent Atoms 332 Heterogen Atoms
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing