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IgE Fv SPE7 complexed with a recombinant thioredoxin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB PDB ENTRY 1ANQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 21% PEG 8K, 0.1M NA CACODYLATE, 0.2M NA ACETATE PH5.5, pH 5.00
Crystal Properties Matthews coefficient Solvent content 1.5 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.352 α = 90 b = 79.467 β = 90 c = 170.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2000-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 35.8 99.6 0.067 13.7 26942 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1ANQ 2.78 30.15 26324 1393 100 0.208 0.305 0.276 0.3296 RANDOM 53.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 1.6 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.435 r_scangle_it 5.81 r_scbond_it 3.472 r_mcangle_it 2.576 r_angle_refined_deg 2.37 r_mcbond_it 1.373 r_angle_other_deg 1.338 r_symmetry_vdw_other 0.287 r_nbd_other 0.278 r_symmetry_hbond_refined 0.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.435 r_scangle_it 5.81 r_scbond_it 3.472 r_mcangle_it 2.576 r_angle_refined_deg 2.37 r_mcbond_it 1.373 r_angle_other_deg 1.338 r_symmetry_vdw_other 0.287 r_nbd_other 0.278 r_symmetry_hbond_refined 0.274 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.261 r_symmetry_vdw_refined 0.195 r_chiral_restr 0.135 r_nbtor_other 0.103 r_bond_refined_d 0.027 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5278 Nucleic Acid Atoms Solvent Atoms 361 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing