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The crystal structure of Echinococcus granulosus fatty-acid-binding protein 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PMP PDB ENTRY 1PMP CHAIN A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.6 30% (V/V) MMEPEG 5000, 0.1 M TRIS-HCL,PH 8.6,0.1 M NAAC.
Crystal Properties Matthews coefficient Solvent content 2 37.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.714 α = 90 b = 54.834 β = 100.34 c = 38.691 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD CYLINDRICAL GRAZING INCIDENCE MIRROR 2001-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30 99.8 0.043 35 5.23 15644 2 12.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 98.6 0.066 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1PMP CHAIN A 1.6 30 15620 1575 99.8 0.174 0.172 0.1851 0.214 RANDOM 11.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.48 -0.9 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.021 r_angle_refined_deg 1.42 r_angle_other_deg 0.778 r_symmetry_vdw_other 0.349 r_nbd_other 0.258 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.137 r_symmetry_vdw_refined 0.132 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.021 r_angle_refined_deg 1.42 r_angle_other_deg 0.778 r_symmetry_vdw_other 0.349 r_nbd_other 0.258 r_nbd_refined 0.187 r_symmetry_hbond_refined 0.137 r_symmetry_vdw_refined 0.132 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.089 r_nbtor_other 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1057 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing