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Structure of CsCBM6-3 from Clostridium stercorarium in complex with cellobiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GMM PDB ENTRY 1GMM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 pH 4.60
Crystal Properties Matthews coefficient Solvent content 1.75 29.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.09 α = 90 b = 52.069 β = 90 c = 64.743 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 40 97.8 0.072 15.6 3.7 66726
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.21 15.3 0.293 2.8 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1GMM 1.15 40.49 31341 1702 75.1 0.124 0.123 0.149 0.1776 RANDOM 8.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.05 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.524 r_scangle_it 4.253 r_angle_other_deg 3.45 r_scbond_it 2.918 r_mcangle_it 2.329 r_angle_refined_deg 1.799 r_mcbond_it 1.591 r_symmetry_vdw_other 0.339 r_nbd_other 0.271 r_nbd_refined 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.524 r_scangle_it 4.253 r_angle_other_deg 3.45 r_scbond_it 2.918 r_mcangle_it 2.329 r_angle_refined_deg 1.799 r_mcbond_it 1.591 r_symmetry_vdw_other 0.339 r_nbd_other 0.271 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.222 r_xyhbond_nbd_refined 0.199 r_symmetry_hbond_refined 0.184 r_chiral_restr 0.124 r_nbtor_other 0.102 r_metal_ion_refined 0.081 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing