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Crystal structure of Alcohol dehydrogenase, iron-containing (TM0920) from Thermotoga maritima at 1.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.7 277 20% PEG-300, 10% glycerol, 0.1M Tris pH 8.5 5% (w/v) PEG-8000, pH 8.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, pH 8.70, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.92 35.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.047 α = 90 b = 85.283 β = 96.29 c = 72.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 FLAT MIRROR 2002-04-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 38.19 97.9 0.076 10.5 3.2 167310 19.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.37 99.1 0.585 1.7 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 38.19 158936 8371 97.8 0.139 0.137 0.2037 0.17 0.2257 RANDOM 10.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.06 0.05 -0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.475 r_dihedral_angle_4_deg 20.252 r_dihedral_angle_3_deg 11.553 r_sphericity_free 6.238 r_scangle_it 5.922 r_dihedral_angle_1_deg 5.306 r_scbond_it 4.114 r_sphericity_bonded 2.969 r_mcangle_it 2.29 r_rigid_bond_restr 1.571
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.475 r_dihedral_angle_4_deg 20.252 r_dihedral_angle_3_deg 11.553 r_sphericity_free 6.238 r_scangle_it 5.922 r_dihedral_angle_1_deg 5.306 r_scbond_it 4.114 r_sphericity_bonded 2.969 r_mcangle_it 2.29 r_rigid_bond_restr 1.571 r_angle_refined_deg 1.532 r_mcbond_it 1.524 r_angle_other_deg 0.989 r_symmetry_vdw_other 0.301 r_symmetry_hbond_refined 0.241 r_nbd_other 0.235 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_refined 0.185 r_chiral_restr 0.093 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5596 Nucleic Acid Atoms Solvent Atoms 892 Heterogen Atoms 116
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling RESOLVE model building SOLVE phasing REFMAC refinement CCP4 data scaling RESOLVE phasing