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Crystal structure of N-acetylglucosamine-6-phosphate deacetylase (TM0814) from Thermotoga maritima at 2.5 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 293 10 % PEG 6000, 1.0 M LiCl, 0.1 M Citric Acid, pH 5.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K, pH 5.00
Crystal Properties Matthews coefficient Solvent content 2.64 52.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.07 α = 90 b = 85.07 β = 90 c = 206.01 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2002-06-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97903, 0.91837, 0.97874 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 42.533 99.9 0.069 19 7.7 30706 58.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.57 100 0.408 5 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 42.53 2 30584 30509 1515 99.7 0.195 0.195 0.1973 0.251 0.1915 RANDOM 40.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.552 -4.912 -5.552 11.105
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.594 c_scbond_it 2.514 c_mcangle_it 2.089 c_angle_deg 1.62 c_mcbond_it 1.291 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.594 c_scbond_it 2.514 c_mcangle_it 2.089 c_angle_deg 1.62 c_mcbond_it 1.291 c_bond_d 0.012 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5620 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction CCP4 data reduction SCALEPACK data scaling SnB phasing MLPHARE phasing CCP4 model building SOLVE phasing CNS refinement CCP4 data scaling CCP4 phasing