1O0A

BACTERIORHODOPSIN L INTERMEDIATE AT 1.62 A RESOLUTION


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1M0LPDB ENTRY 1M0L

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1CUBIC LIPID PHASE5.6295POTASSIUM [PHOSPHATE, pH 5.60, CUBIC LIPID PHASE, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
1.7742.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.801α = 90
b = 60.801β = 90
c = 107.778γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM2002-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.979ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.622599.70.05836.12818128097-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.621.6988.90.5932.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE RPDB ENTRY 1M0L1.622526483165085.50.15440.2115THIN SHELLS
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
Coordinate Error
Structure Solution MethodRefinement High ResolutionRefinement Low Resolution
2302073.02
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.06
s_angle_d0.049
s_zero_chiral_vol0.049
s_anti_bump_dis_restr0.04
s_from_restr_planes0.0229
s_bond_d0.016
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1720
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms329

Software

Software
Software NamePurpose
HKL-2000data collection
HKL-2000data reduction
SHELXmodel building
SHELXL-97refinement
HKL-2000data reduction
HKL-2000data scaling
SHELXphasing