☰ Navigation Tabs
Limonene-1,2-epoxide hydrolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Model from structure solution using SAD on Se-Met labelled protein. SAD data collected at ESRF beamline ID14-1 at 0.934 A wavelength.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 PEG 6000, LiCl, MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.85 33.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.548 α = 90 b = 47.652 β = 90 c = 129.701 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 1999-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.931 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 64.6 99.7 0.063 28.2 4.1 89183 88916
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.21 94.1 0.272 3.5 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT Model from structure solution using SAD on Se-Met labelled
protein. SAD data collected at ESRF beamline ID14-1 at 0.934 A wavelength. 1.2 50 84491 84491 4306 100 0.14822 0.14822 0.14686 0.1481 0.17451 0.1732 RANDOM 13.873
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 -0.01 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.784 r_sphericity_free 15.439 r_sphericity_bonded 6.679 r_dihedral_angle_1_deg 6.02 r_scangle_it 5.31 r_scbond_it 3.739 r_angle_other_deg 3.181 r_mcangle_it 2.778 r_angle_refined_deg 2.384 r_mcbond_it 1.899
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.784 r_sphericity_free 15.439 r_sphericity_bonded 6.679 r_dihedral_angle_1_deg 6.02 r_scangle_it 5.31 r_scbond_it 3.739 r_angle_other_deg 3.181 r_mcangle_it 2.778 r_angle_refined_deg 2.384 r_mcbond_it 1.899 r_rigid_bond_restr 1.825 r_symmetry_vdw_refined 0.569 r_nbtor_other 0.274 r_symmetry_vdw_other 0.272 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.217 r_nbd_other 0.199 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.127 r_xyhbond_nbd_other 0.064 r_bond_refined_d 0.023 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2305 Nucleic Acid Atoms Solvent Atoms 378 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SnB phasing MLPHARE phasing