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Limonene-1,2-epoxide hydrolase in complex with valpromide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 PEG 6000, LiCl, MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.9 34.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.596 α = 90 b = 47.656 β = 90 c = 129.244 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 0.944 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 29 99.3 0.056 20.7 3.9 29009 29009
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.8 97.5 0.107 12.2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.75 29 27715 27485 1469 99.17 0.15945 0.15945 0.15759 0.1712 0.19533 0.2068 RANDOM 13.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.13 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.182 r_scangle_it 4.068 r_scbond_it 2.53 r_angle_refined_deg 1.921 r_mcangle_it 1.541 r_mcbond_it 0.932 r_angle_other_deg 0.855 r_symmetry_vdw_refined 0.278 r_nbd_other 0.248 r_symmetry_vdw_other 0.225
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.182 r_scangle_it 4.068 r_scbond_it 2.53 r_angle_refined_deg 1.921 r_mcangle_it 1.541 r_mcbond_it 0.932 r_angle_other_deg 0.855 r_symmetry_vdw_refined 0.278 r_nbd_other 0.248 r_symmetry_vdw_other 0.225 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.112 r_nbtor_other 0.084 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2281 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling FFT phasing