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Crystal Structure of Mitochondrial Cytochrome bc1 Complex at 2.4 Angstrom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 277 PEG 4000, ammonium acetate, potassium chloride, glyerol, DMG/SPC, MOPS, pH 7.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.69 66.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.325 α = 90 b = 154.325 β = 90 c = 593.161 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Si(111) M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 1.0 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 85.7 139726 119745 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.461 77.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.4 20 119745 115874 3584 85.82 0.238 0.23808 0.23662 0.285 RANDOM 25.561
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 1.02 -2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.535 r_scangle_it 8.295 r_scbond_it 6.244 r_dihedral_angle_1_deg 3.426 r_mcangle_it 2.679 r_angle_refined_deg 1.894 r_mcbond_it 0.657 r_symmetry_hbond_refined 0.454 r_chiral_restr 0.281 r_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.535 r_scangle_it 8.295 r_scbond_it 6.244 r_dihedral_angle_1_deg 3.426 r_mcangle_it 2.679 r_angle_refined_deg 1.894 r_mcbond_it 0.657 r_symmetry_hbond_refined 0.454 r_chiral_restr 0.281 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.218 r_xyhbond_nbd_refined 0.208 r_bond_refined_d 0.015 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16462 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 133
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling