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Azobenzene Reductase from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 trisodium citrate, sodium HEPES, sucrose, pH 7.5-8.5, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.99 68.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.72 α = 90 b = 112.72 β = 90 c = 90.011 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC-2 2002-08-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940, 0.97926, 0.95372 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 89.2 22141 19743 1.5 38.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 48.81 1.5 22142 17370 1593 78.4 0.238 0.223 0.221 0.2311 0.238 0.2491 random 52.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.64 -0.89 -10.64 21.27
RMS Deviations Key Refinement Restraint Deviation x_torsion_deg 22 x_angle_deg 1.6 x_torsion_impr_deg 0.88 x_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1309 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 31
Software Software Software Name Purpose CNS refinement d*TREK data reduction HKL-2000 data reduction SCALEPACK data scaling CNS phasing SOLVE phasing RESOLVE phasing