☰ Navigation Tabs
Crystal Structure Analysis of Haemophlius Influenzae Ferric-ion Binding Protein H9Q Mutant Form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D9V PDB ENTRY 1D9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 293 PEG 5000, Tris HCl, pH 8.2, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 1.74 28.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.101 α = 90 b = 75.344 β = 90 c = 33.503 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2002-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 105.41 89423
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.14 36.1 0.199
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1D9V 1.1 105.41 89423 89423 4721 86.16 0.1594 0.15934 0.15823 0.1804 0.1992 RANDOM 9.042
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 0.04 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.4 r_scangle_it 3.346 r_scbond_it 2.165 r_mcangle_it 1.506 r_angle_refined_deg 1.257 r_mcbond_it 0.938 r_angle_other_deg 0.901 r_symmetry_vdw_other 0.292 r_symmetry_vdw_refined 0.267 r_nbd_other 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.4 r_scangle_it 3.346 r_scbond_it 2.165 r_mcangle_it 1.506 r_angle_refined_deg 1.257 r_mcbond_it 0.938 r_angle_other_deg 0.901 r_symmetry_vdw_other 0.292 r_symmetry_vdw_refined 0.267 r_nbd_other 0.242 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.109 r_nbtor_other 0.087 r_symmetry_hbond_refined 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2342 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 21
Software Software Software Name Purpose HKL-2000 data collection TRUNCATE data reduction MOLREP phasing REFMAC refinement HKL-2000 data reduction CCP4 data scaling