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2.0 A structure of glycerol metabolism protein from E. coli
Crystallization Crystal Properties Matthews coefficient Solvent content 2.25 45.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.453 α = 90 b = 61.453 β = 90 c = 171.74 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE mirror 2002-04-22 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD CUSTOM-MADE mirror 2001-12-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793, 0.9795 APS 19-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 1.0332 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 50 0.66 22955
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 0.327 2102
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 50 20446 1095 93.11 0.18934 0.18656 0.2436 RANDOM 22.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 1.05 -2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.541 r_scangle_it 4.356 r_scbond_it 2.672 r_angle_refined_deg 1.895 r_mcangle_it 1.752 r_mcbond_it 1.001 r_angle_other_deg 0.952 r_symmetry_vdw_other 0.33 r_symmetry_vdw_refined 0.274 r_nbd_other 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.541 r_scangle_it 4.356 r_scbond_it 2.672 r_angle_refined_deg 1.895 r_mcangle_it 1.752 r_mcbond_it 1.001 r_angle_other_deg 0.952 r_symmetry_vdw_other 0.33 r_symmetry_vdw_refined 0.274 r_nbd_other 0.249 r_xyhbond_nbd_refined 0.206 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.184 r_chiral_restr 0.126 r_nbtor_other 0.09 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_xyhbond_nbd_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2192 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling SOLVE phasing RESOLVE phasing