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APOLIPOPROTEIN E3 (APOE3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LPE PHASING MODEL DERIVED FROM PDB ENTRY 1LPE
Crystallization Crystal Properties Matthews coefficient Solvent content 3.01 59.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.701 α = 90 b = 53.355 β = 90 c = 84.509 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 AREA DETECTOR ADSC M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 15 94 0.0373 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT WITH PHASE IMPROVEMENT BY HOLOGRAPHIC RECONSTRUCTION OF ELECTRON DENSITY R-FREE PHASING MODEL DERIVED FROM PDB ENTRY 1LPE 1.8 8 16562 1656 94 0.213 0.209 0.259 EVERY 10TH REFLECTION
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_angle_d 2 s_from_restr_planes 0.11 s_anti_bump_dis_restr 0.072 s_zero_chiral_vol 0.064 s_approx_iso_adps 0.054 s_similar_adp_cmpnt 0.04 s_bond_d 0.011 s_similar_dist s_non_zero_chiral_vol s_rigid_bond_adp_cmpnt
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1008 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms
Software Software Software Name Purpose SHELXL-93 model building X-PLOR model building SHELXL-93 refinement X-PLOR refinement ADSC data collection SHELXL-93 phasing X-PLOR phasing