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Triosephosphate Isomerase in Complex with DHAP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I45 pdb entry 1I45
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION, RECRYSTALLIZATION 6.8 277 50mM TRIS, 50mM NaCl, 20%PEG 4000, 30mM DHAP, pH 6.8, EVAPORATION, RECRYSTALLIZATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.79 31.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.62 α = 90 b = 82.8 β = 101.75 c = 38.214 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.9280 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 95.7 0.057 134020 134020
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.2 1.24 91.3 0.237
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R pdb entry 1I45 1.2 30 134020 134020 13361 95.7 0.125 0.125 0.1246 0.15 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 16 3790.7 4548.7
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.082 s_anti_bump_dis_restr 0.076 s_zero_chiral_vol 0.071 s_angle_d 0.029 s_bond_d 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7630 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling COMO phasing SHELXL-97 refinement