☰ Navigation Tabs
Horse Liver Alcohol Dehydrogenase Complexed with NAD+ and 4-Iodopyrazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB ENTRY 1HLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Dialysis 7 277 MPD, pH 7.0, Dialysis, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.17 42.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.2 α = 78.96 b = 51.05 β = 75.47 c = 93.23 γ = 70.24
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV confocal osmic 2001-03-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 20 88.8 0.054 0.054 5.9 2.1 156075 109109
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.47 1.508 69 0.127 0.127 4.1 5097
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HLD 1.47 20 156075 109109 2234 88.8 0.1515 0.151 0.151 0.1576 0.1831 0.1895 RANDOM 17.152
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.02 0.78 -0.21 0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.496 r_sphericity_bonded 7.943 r_dihedral_angle_1_deg 6.051 r_scangle_it 5.258 r_angle_other_deg 3.608 r_scbond_it 3.604 r_mcangle_it 2.276 r_angle_refined_deg 1.634 r_mcbond_it 1.513 r_rigid_bond_restr 1.376
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 9.496 r_sphericity_bonded 7.943 r_dihedral_angle_1_deg 6.051 r_scangle_it 5.258 r_angle_other_deg 3.608 r_scbond_it 3.604 r_mcangle_it 2.276 r_angle_refined_deg 1.634 r_mcbond_it 1.513 r_rigid_bond_restr 1.376 r_symmetry_vdw_other 0.308 r_nbd_other 0.288 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.106 r_nbtor_other 0.106 r_xyhbond_nbd_refined 0.094 r_bond_refined_d 0.016 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5570 Nucleic Acid Atoms Solvent Atoms 589 Heterogen Atoms 104
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction AMoRE phasing REFMAC refinement