X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529334% MPEG 2000, 0.1M Na cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.6926.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 33.46α = 90
b = 54.18β = 93.88
c = 56.38γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42000-12-05MSAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9197ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.395595.70.0545.72.9383543835411
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.391.44870.2472.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.395513678936789154495.640.18090.18090.180020.20178RANDOM14.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.060.340.31-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.063
r_scangle_it3.843
r_dihedral_angle_1_deg3.299
r_scbond_it2.566
r_mcangle_it1.436
r_angle_refined_deg1.373
r_angle_other_deg1.171
r_mcbond_it0.771
r_xyhbond_nbd_other0.321
r_nbd_refined0.267
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.063
r_scangle_it3.843
r_dihedral_angle_1_deg3.299
r_scbond_it2.566
r_mcangle_it1.436
r_angle_refined_deg1.373
r_angle_other_deg1.171
r_mcbond_it0.771
r_xyhbond_nbd_other0.321
r_nbd_refined0.267
r_nbd_other0.215
r_symmetry_hbond_refined0.215
r_xyhbond_nbd_refined0.213
r_symmetry_vdw_other0.187
r_symmetry_vdw_refined0.092
r_chiral_restr0.089
r_gen_planes_other0.073
r_symmetry_hbond_other0.04
r_gen_planes_refined0.025
r_bond_refined_d0.011
r_bond_other_d0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1668
Nucleic Acid Atoms
Solvent Atoms405
Heterogen Atoms84

Software

Software
Software NamePurpose
DENZOdata reduction
SCALAdata scaling
SOLVEphasing
REFMACrefinement
CCP4data scaling