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Crystal Structure of the complex between the Orphan Nuclear Hormone Receptor ROR(alpha)-LBD and Cholesterol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 4000, sodium acetate, hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 46.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.8 α = 90 b = 49.7 β = 98.4 c = 60.5 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 IMAGE PLATE MARRESEARCH 2001-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM1A 0.8727 ESRF BM1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 15 95.36 0.04 32 3.65 38783 38783 22.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.63 1.69 67.3 0.433 2.1 2.5 2775
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.63 15 38477 36564 1913 95.36 0.2018 0.2018 0.20067 0.2105 0.22277 0.2278 RANDOM 22.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.33 -0.61 -0.12 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.132 r_scangle_it 3.429 r_dihedral_angle_1_deg 3.298 r_scbond_it 2.086 r_mcangle_it 1.35 r_angle_refined_deg 1.135 r_mcbond_it 0.694 r_angle_other_deg 0.651 r_symmetry_vdw_other 0.254 r_nbd_refined 0.241
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.132 r_scangle_it 3.429 r_dihedral_angle_1_deg 3.298 r_scbond_it 2.086 r_mcangle_it 1.35 r_angle_refined_deg 1.135 r_mcbond_it 0.694 r_angle_other_deg 0.651 r_symmetry_vdw_other 0.254 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.198 r_xyhbond_nbd_refined 0.197 r_nbd_other 0.193 r_symmetry_hbond_refined 0.153 r_chiral_restr 0.068 r_xyhbond_nbd_other 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2066 Nucleic Acid Atoms Solvent Atoms 419 Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MLPHARE phasing REFMAC refinement