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Complex structure of Pex13p SH3 domain with a peptide of Pex14p
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 298 Ammonium sulfate, lithium sulfate, tris, pH 7.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.83 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.35 α = 90 b = 63.204 β = 90 c = 66.935 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 IMAGE PLATE MARRESEARCH 2001-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.1 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 25 93.8 0.0065 21.1 4.3 6298 5907 65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 97.4 0.033 2.9 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 25 6298 5563 265 93.86 0.2456 0.24568 0.24434 0.2447 0.27306 RANDOM 7.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.3 2.31 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.77 r_dihedral_angle_1_deg 3.548 r_scangle_it 3.506 r_scbond_it 2.141 r_angle_refined_deg 1.768 r_mcangle_it 1.631 r_mcbond_it 0.87 r_nbd_refined 0.28 r_symmetry_vdw_refined 0.269 r_symmetry_hbond_refined 0.182
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.77 r_dihedral_angle_1_deg 3.548 r_scangle_it 3.506 r_scbond_it 2.141 r_angle_refined_deg 1.768 r_mcangle_it 1.631 r_mcbond_it 0.87 r_nbd_refined 0.28 r_symmetry_vdw_refined 0.269 r_symmetry_hbond_refined 0.182 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.092 r_bond_refined_d 0.021 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1326 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling BEAST model building REFMAC refinement BEAST phasing